Running labkey in kubernetes

Start server

studen@labkey> sudo swapoff -a
studen@labkey> cd k8setup
studen@labkey:~/k8setup$ ./startCluster.sh
studen@labkey:~/k8setup$ ./login.sh
studen@labkey:~/k8setup$ cp ~/.logins/studen.conf ~/.kube/config

Start labkey

Start database:

studen@labkey> sudo su labkey
labkey@labkey> cp ~studen/.logins/labkey.conf ~/.kube/config
labkey@labkey> cd labkeyK8s/pods/labkey-db
labkey@labkey:~/labkeyK8s/pods/labkey-db$ ./startPod.sh

Start labkey:

labkey@labkey> cd ~/labkeyK8s/pods/labkey-web
#starts all pods in env.sh
labkey@labkey:~/labkeyK8s/pods/labkey-web$ ./startPod.sh

Start reverse proxy

labkey@labkey> cd ~/labkeyK8s/pods/nginx
#check env.sh, ORTHANCS to see whether you should start orthanc pods, too
labkey@labkey:~/labkeyK8s/pods/nginx$ ./startPod.sh

Check if things are running:

labkey@labkey> kubectl get pods -A
#no errors should be reported